Publications by Juan_Steibel
locomotion analyses
Table of contents First read and summarize data How NOT to do stuff How to do it with tidyverse reformat fit model per trait Represent results Analysis of feet and leg features Effect of diet on automatically extracted features Author Juan Steibel Published December 16, 2024 Code # good habit to run is the sessionInfo() function to print...
1651 sym Python (48532 sym/182 pcs) 3 img
Meta analysis simulation
Simulation meta analysis Simulation for meta analysis Goal: simulate data of two indepentent BLUP predictors of a random quantity and evaluate alternative meta-analysis weight combinations. Simulation Start by setting up inputs: variance of random variable and variances of estimators (have to be smaller than the variance of the variable). Number ...
1275 sym Python (1864 sym/60 pcs)
Gene expression t-test
Analysis of log-FC BGC vs noBCG The problem Compare log-FC between two treatment group. FC is between Stimulated and Non-stimulated responses from each animal n=0. Inputs Two inputs are are: log-FC-CPM table with 16 columns and G genes design matrix with 16 rows that indicates what is the treatment of each column of the log-FC table # read and ...
752 sym Python (6133 sym/38 pcs)
GWA from GBLUP
Table of contents Packages initialize Data Create a G matrix using VanRaden method #1. Let’s perform the same GWA as in the HW question to the class Carcass Weigth LMA Backfat Let’s now build an IC against the highest peak Gwa from GBLUP AnS 656 Author Austin Putz and Juan Steibel Published March 19, 2024 Main Path: “C:/Users/jste...
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Document
Table of contents Packages initialize Data Create a G matrix using VanRaden method #1. Let’s perform the same GWA as in the HW question to the class Carcass Weigth LMA Backfat Let’s now build an IC against the highest peak Gwa from GBLUP AnS 656 Author Austin Putz and Juan Steibel Published March 19, 2024 Main Path: “C:/Users/jste...
2600 sym Python (20880 sym/146 pcs) 6 img 4 tbl
Document
Table of contents Raw Performance Data summarize the ADG data by overlapping periods in each barn Find the timeperiods in each barn when pigs were tested Look at overlapp between those periods and create unique non-overlapping periods Heat stress performance data Data formatting, checking Author Juan Steibel Published March 7, 2024 Raw Per...
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Report Berkshire test
Table of contents Start reading historical data and current placement data Sire without data Read quality data and print samples without IMF and other MQ Import Weight data Join placement, weight and meat quality compare this year’s results to data up to 2022 compare means Full comparison between years Full comparison between years and sexes B...
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Berkshire test data check
Table of contents Start reading historical data and current placement data Sire without data Read quality data and print samples without IMF and other MQ Import Weight data Join placement, weight and meat quality compare this year’s results to data up to 2022 compare means full comparison of several statistics Berkshire 2023 progeny testing Da...
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Pig weight prediction
Table of contents Setup Code Read file and check input Summary of most important variables model the mean of weights over time using polynomial regressions Model variances and individual growth curves using random regression Week 8 Intro to regression Author Juan Steibel Published October 10, 2023 Setup Code #=============================...
837 sym Python (12998 sym/35 pcs) 6 img
example
example Quarto Quarto enables you to weave together content and executable code into a finished document. To learn more about Quarto see https://quarto.org. Running Code When you click the Render button a document will be generated that includes both content and the output of embedded code. You can embed code like this: 1 + 1 [1] 2 You can add...
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