Publications by Anna Konstorum (
Document
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Lo...
547 sym R (66778 sym/258 pcs) 39 img
Document
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fin...
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Document
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fin...
509 sym R (48484 sym/217 pcs) 27 img
imputation2021
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute)}) Find features in other experiments cells <- read...
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imputationTechniques_2020
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap")}) Find features in other experiments cells <- read_tsv(here("./data/2021LD_pbmc_cell_frequenc...
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BatchCorrectedData
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(here)}) Load data and Generate Mofa object set.seed(1) knitr::opts_chunk$set(warning = FALSE, message = FALSE) add_cols <- function(df, cols) { add <- cols[!cols %in% names(df)] if(length(add) != 0)...
422 sym R (9339 sym/44 pcs) 19 img 2 tbl
BatchCorrected_50samplesRemoved
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(here)}) Load data and Generate Mofa object set.seed(1) knitr::opts_chunk$set(warning = FALSE, message = FALSE) imputationTestingList <- list() add_cols <- function(df, cols) { add <- cols[!cols %in% ...
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mofa_2020
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(here)}) Load data and Generate Mofa object set.seed(1) knitr::opts_chunk$set(warning = FALSE, message = FALSE) add_cols <- function(df, cols) { add <- cols[!cols %in% names(df)] if(length(add) != 0)...
396 sym R (9430 sym/44 pcs) 19 img 2 tbl
MOFA_dataset2020_20sample removed
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(here)}) Load data and Generate Mofa object set.seed(1) knitr::opts_chunk$set(warning = FALSE, message = FALSE) imputationTestingList <- list() add_cols <- function(df, cols) { add <- cols[!cols %in% ...
396 sym R (10638 sym/44 pcs) 19 img 2 tbl
mofa_2020Dataset_20samplesRemoved
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(here)}) Load data and Generate Mofa object set.seed(1) knitr::opts_chunk$set(warning = FALSE, message = FALSE) imputationTestingList <- list() add_cols <- function(df, cols) { add <- cols[!cols %in% ...
396 sym R (10612 sym/44 pcs) 19 img 2 tbl