Publications by Anna Konstorum (
mofaImputation_batchCorretion
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) # library('ComplexUpset') # library("ComplexHeatmap") library(mice) # library(VIM) library(impute) library(BatchQC) library(sva) source(here("./...
879 sym R (49658 sym/64 pcs) 142 img
Mofa Imputation and Batch Correction 2020 and 2021
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) # library('ComplexUpset') # library("ComplexHeatmap") library(mice) # library(VIM) library(impute) library(BatchQC) library(sva) source("./src/c...
747 sym R (44170 sym/55 pcs) 118 img
cytofCorrection
Load libraries suppressPackageStartupMessages({library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(BatchQC) library(sva)}) Find features in o...
132 sym R (8679 sym/29 pcs) 16 img
pramod_imputation
Load data base_data_dir = "/home/rnili/repo/rCodes/Rasteh_data_check/" suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(im...
207 sym R (19688 sym/96 pcs) 12 img
pramod_imputation_nocyteof
Load data base_data_dir = "/home/rnili/repo/rCodes/Rasteh_data_check/" # base_data_dir = "/home/rnili/repo/rCodes/imputation/data" suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') lib...
207 sym R (19750 sym/96 pcs) 12 img
usedBatchcorrectedFeatures
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fi...
663 sym R (64191 sym/290 pcs) 51 img
usedBatchcorrectedFeatures_combined2020_2021
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fi...
577 sym R (60036 sym/254 pcs) 39 img
usedBatchcorrectedFeatures_combined2020_2021
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fi...
577 sym R (60052 sym/254 pcs) 39 img
Publish Document
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fi...
351 sym R (31946 sym/167 pcs) 11 img
Publish Document
Load libraries suppressPackageStartupMessages({ library(MOFA2) library(kableExtra) library(data.table) library(ggplot2) library(tidyverse) library(readr) library(here) library(matrixStats) library(imputeTS) library('ComplexUpset') library("ComplexHeatmap") library(mice) library(VIM) library(impute) library(pvca) library(Biobase) library(lme4)}) Fi...
667 sym R (67306 sym/294 pcs) 51 img