Publications by Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson
reseco_lma_plsr_example
Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose the “optimal” number of plsr components, and fit a plsr model for leaf-mass area (LMA) Getting Started Step 1. Load libraries needed to run example script list.of.packages <- c("pls","dplyr","reshape2","here","plotrix","...
1191 sym R (24976 sym/96 pcs) 8 img
apply_sserbin2019_plsr_to_neon_example
Getting Started Load libraries list.of.packages <- c("pls","dplyr","reshape2","here","plotrix","ggplot2","gridExtra", "spectratrait") invisible(lapply(list.of.packages, library, character.only = TRUE)) ## ## Attaching package: 'pls' ## The following object is masked from 'package:stats': ## ## loadings ## ## Attachin...
513 sym R (11060 sym/57 pcs) 1 img
reseco_lma_plsr_example
Spectra-trait PLSR example using leaf-level spectra and leaf mass per area (LMA) data from 36 species growing in Rosa rugosa invaded coastal grassland communities in Belgium Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose t...
1352 sym R (33483 sym/94 pcs) 8 img
neon_leafN_canopy_plsr_example
Overview This is an R Markdown Notebook to illustrate how to develop pixel-scale spectra-trait PLSR models. This example uses image data from NEON AOP and associated field measurements of leaf nitrogen content collected across a range of CONUS NEON sites. For more information refer to the dataset EcoSIS page: https://ecosis.org/package/canopy-spe...
29671 sym R (21458 sym/88 pcs) 8 img
ely_leafN_bootstrap_plsr_example
Spectra-trait PLSR example using leaf-level spectra and leaf nitrogen content (Narea, g/m2) data from eight different crop species growing in a glasshouse at Brookhaven National Laboratory. Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson Overview This is an R Markdown Notebook to illustrate how to load an internal dataset (“ely_plsr_data”)...
1127 sym R (26988 sym/89 pcs) 8 img
kit_sla_plsr_example
Spectra-trait PLSR example using leaf-level spectra and specific leaf area (SLA) data from more than 40 species grassland species comprising both herbs and graminoids. Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose the “...
1370 sym R (538571 sym/93 pcs) 8 img
neon_lma_plsr_example
Spectra-trait PLSR example using leaf-level spectra and leaf mass per area (LMA) data from CONUS NEON sites Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose the “optimal” number of plsr components, and fit a plsr model f...
1152 sym R (29108 sym/89 pcs) 8 img
reseco_leafN_bootstrap_plsr_example
Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose the “optimal” number of plsr components, and fit a plsr model for leaf nitrogen content (Narea, g/m2) Getting Started Load libraries list.of.packages <- c("pls","dplyr","reshape2","here","plotrix","ggplot2","gridExtra", ...
985 sym R (23488 sym/97 pcs) 8 img
reseco_leafN_plsr_example
Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral database, choose the “optimal” number of plsr components, and fit a plsr model for leaf nitrogen content (Narea, g/m2) Getting Started Load libraries list.of.packages <- c("pls","dplyr","here","plotrix","ggplot2","gridExtra","spectratrai...
26364 sym R (22176 sym/87 pcs) 8 img
reseco_lma_plsr_example
Spectra-trait PLSR example using leaf-level spectra and leaf mass per area (LMA) data from 36 species growing in Rosa rugosa invaded coastal grassland communities in Belgium Shawn P. Serbin, Julien Lamour, & Jeremiah Anderson 2022-03-15 Overview This is an R Markdown Notebook to illustrate how to retrieve a dataset from the EcoSIS spectral databas...
1363 sym R (33543 sym/94 pcs) 8 img