Publications by Sam Rowe
coxiella preliminary findings 4 - test day
Table of contents Acknowledgements Import data and start packages Custom Functions Dataframes Important notes about the dataset Oveview of modelling approach used Outcome = Milk yield (test day) Overview of outcome, follow-up period, and possible confounders Exposure x outcome x covariates grid Multivariable models Forest plot Dump table out E...
8150 sym Python (80919 sym/132 pcs) 182 img 165 tbl
coxiella preliminary findings 2 - cow health and survival
Table of contents Acknowledgements Import data and start packages Custom Functions Dataframes Import Survival dataset Import Health outcomes dataset Time to death, sold or decision to cull the cow Overview of event, time at risk, competing risk events, and possible confounders Exposure x outcome x covariates grid Failure curves for all reasons...
4830 sym Python (209658 sym/153 pcs) 295 img 341 tbl
coxiella preliminary findings 3 - calf
Table of contents Acknowledgements Import data and start packages Custom Functions Dataframes Import Dataset Exposure - outcome - covariates grid Survival (time to departure) Overview of event, time at risk, competing risk events, and possible confounders Failure curves Multivariable time to event models Dump table out Exploratory models Rel...
4125 sym Python (169626 sym/182 pcs) 224 img 156 tbl
coxiella preliminary findings 1 - reproduction
Table of contents Acknowledgements Import data and start packages Custom Functions Dataframes Import Reproductive performance Import Abortion Dataset Outcome = Pregnancy Overview of event, time at risk, competing risk events, and possible confounders Exposure x outcome x covariates grid Failure curves Multivariable time to event models Dump t...
4906 sym Python (202200 sym/204 pcs) 393 img 405 tbl
IgG Trial Simulation
Table of contents Overview Interim conclusions Functions to convert Brix % to IgG Create a function that finds the mean serum IgG at different ftpi risk levels Function to perform 2 x 2 statistics Function to create 1 iteration in the simulation Run simulation Summary from simulations If underlying risk difference = 0 Proportion of studies t...
3221 sym Python (19295 sym/25 pcs) 12 img
prelim - calf health
Table of contents Acknowledgements Import data and start packages Definitions of outcomes, time at risk, and possible confounders. Death Scours Respiratory disease Dataframe summary Exposure - outcome - covariates grid Descriptive analysis Modelling Coxiella and Health Outcomes Acknowledgements Authors and affiliations Thank you Funding F...
1942 sym 126 img 131 tbl
prelim - repro
Table of contents Acknowledgements Import data and start packages Import Survival dataset Import Reproductive performance Import Reproductive performance Import Abortion Dataset Definitions of outcomes, time at risk, and possible confounders. Calving to departure from herd (death, sold) Calving to pregnancy Abortion Dataframe summary Departure...
4797 sym Python (85337 sym/92 pcs) 336 img 422 tbl
prelim - health
Table of contents Acknowledgements Import data and start packages Dataframe summary Outcome = Mastitis Exposure - outcome - covariates grid Failure curves Mastitis Multivariable time to event models Run models Investigating relationship between l4_pokeweed_il10 and Mastitis Outcome = Non-mastitis disease composite Coxiella and Health Outcom...
1725 sym 128 img 178 tbl
preliminary data
Table of contents Acknowledgements Import data and start packages Import Survival dataset Import Reproductive performance Import Reproductive performance Import Abortion Dataset Definitions of outcomes, time at risk, and possible confounders. Calving to departure from herd (death, sold) Calving to pregnancy Abortion Dataframe summary Departure...
5112 sym Python (85337 sym/92 pcs) 336 img 422 tbl
prelminary data
Table of contents Acknowledgements Import data and start packages Import Survival dataset Import Reproductive performance Import Reproductive performance Import Abortion Dataset Definitions of outcomes, time at risk, and possible confounders. Calvign to departure from herd (death, sold) Calving to pregnancy Abortion Dataframe summary Departure...
4749 sym 335 img 422 tbl