Publications by Naomi Bakken
R. aurorubens body size models
This R markdown file includes all the R code used to analyze Vermilion Snapper (Rhomboplites aurorubens) fork length-weight, total length-weight, and maturity relationships. Load libraries library(tidyverse) library(brms) # for Bayesian regression modeling using Stan library(rstudioapi) library(nls.multstart) # for nonlinear least squares reg...
4131 sym R (51339 sym/110 pcs) 34 img 1 tbl
Biometric sampling overview and subsets
This RMarkdown file includes the analysis on the snappers sampled overall for biometric measurements. Additionally, The brms package will not run when the conflicted package is installed, which is needed for certain functions in the dpylr package to work. So in this line of code I will do all the df subsetting steps which will be saved in the ...
974 sym R (40110 sym/49 pcs) 5 img
Onboard and Grid board Sampling Length Analysis
Load libraries library(tidyverse) ## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ── ## ✔ dplyr 1.1.4 ✔ readr 2.1.5 ## ✔ forcats 1.0.0 ✔ stringr 1.5.1 ## ✔ ggplot2 3.5.1 ✔ tibble 3.2.1 ## ✔ lubridate 1.9.3 ✔ ...
3094 sym R (38458 sym/97 pcs) 6 img
E. oculatus body size analysis
This R markdown file includes all the R code used to analyze Queen Snapper (Etelis oculatus) size data. Load libraries library(tidyverse) library(rstudioapi) library(stringr) # for wrapping text on graphics library(vtable) Load data file qsdf_2506 <- read.csv("qs2506df.csv") qsdf_2506$catch_month <- factor(qsdf_2506$catch_month) qsdf_2506$...
147 sym R (762 sym/5 pcs)
L. buccanella body size models
This R markdown file includes all the R code used to analyze Blackfin Snapper (Lutjanus buccanella) fork length-weight, total length-weight, and maturity relationships. Load libraries library(tidyverse) library(brms) # for Bayesian regression modeling using Stan library(rstudioapi) library(nls.multstart) # for nonlinear least squares regressi...
6863 sym R (89280 sym/203 pcs) 42 img 1 tbl
L. synagris body size models
This R markdown file includes all the R code used to analyze Lane Snapper (Lutjanus sayngris) fork length-weight, total length-weight, and maturity relationships. Load libraries library(tidyverse) library(brms) # for Bayesian regression modeling using Stan library(rstudioapi) library(nls.multstart) # for nonlinear least squares regression mod...
5478 sym R (66603 sym/153 pcs) 46 img 1 tbl
P. aquilonaris body size models
This R markdown file includes all the R code used to analyze Wenchman Snapper (Pristipomoides aquilonaris) fork length-weight, total length-weight, and maturity relationships. Load libraries library(tidyverse) library(brms) # for Bayesian regression modeling using Stan library(rstudioapi) library(nls.multstart) # for nonlinear least squares r...
4567 sym R (54716 sym/121 pcs) 36 img 1 tbl
L. vivanus body size models
This R markdown file includes all the R code used to analyze Yelloweye Snapper (Lutjanus vivanus) fork length-weight, total length-weight, and maturity relationships. Load libraries library(tidyverse) library(brms) # for Bayesian regression modeling using Stan library(rstudioapi) library(nls.multstart) # for nonlinear least squares regression...
5564 sym R (70417 sym/151 pcs) 39 img 1 tbl
Condition Factors Kc and Kn
This RMarkdown file contains the processes used for calculating Fulton’s condition factor (Kc) and the relative condition factor (Kn) of snappers caught on the Saba Bank between June 2023 and June 2024 Load libraries library(ggplot2) library(conflicted) library(cowplot) library(patchwork) library(summarytools) library(tidyverse) library(...
472 sym R (6229 sym/14 pcs) 2 img