Publications by Jamie Kerlin
Install and Load Packages in R
Introduction R works by running functions that live within packages. To use these packages, we must install them and load them whenever we open or restart R. Here, I will show how to install/load packages and have you install 3 of my favorite packages. Installing Packages We need to install packages before we can use them. I will use the tidyv...
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Importing Data in R
Introduction First, let’s learn how to bring our data into R. Of course, this assumes we have data! If you don’t have data to use, you can always download free sample data from Kaggle or similar websites. Today, we will use the palmerpenguins dataset. Load packages First, we will install any load any necessary packages. If you need a refr...
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Intro to the Tidyverse
1 Overview 1.1 Purpose The purpose of this document is to provide an introduction into using Tidyverse in R. We will review the “core” packages within the Tidyverse and give examples. 1.2 Load packages package_names <- c("tidyverse", "here", "janitor", "vtable") for(x in package_names){ if (!x %in% rownames(installed.packages())) install...
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Publish Document
Notes This document is set up to run the entire analysis. The order is: Load and clean metadata Load and clean colony areas to calculate growth rate Load and clean colony and interaction perimeters Calculate survivorship for each year Load and quality check environmental data from MCR LTER Load and quality check percent cover data from MCR LTER...
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Publish Document
Notes This document is set up to run the entire analysis. The order is: Load and clean metadata Load and clean colony areas to calculate growth rate Load and clean colony and interaction perimeters Calculate survivorship for each year Load and quality check environmental data from MCR LTER Load and quality check percent cover data from MCR LTER...
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SEM Update 5-2023
Notes This document is set up to run the entire analysis. The order is: Load and clean metadata Load and clean colony areas to calculate growth rate Load and clean colony and interaction perimeters Calculate survivorship for each year Load and quality check environmental data from MCR LTER Load and quality check percent cover data from MCR LTER...
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PQ Analysis Update 2022-02-28
This document is set up to run the entire analysis. The order is: Load and clean metadata Load and clean colony areas to calculate growth rate Load and clean colony and interaction perimeters Calculate survivorship for each year Load and quality check environmental data from MCR LTER Load and quality check percent cover data from MCR LTER 6.5) ...
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