Publications by Hannah Jackson
R_functions_structure
Functions and data structures in R… …and how to use them! Dr Hannah Jackson hannah.j.jackson@kcl.ac.uk Learning Objectives To understand the use of functions in R To describe the 4 main data structures in R To understand how functions can be used with various data structures in bioinformatics To follow along: https://tinyurl.com/function...
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Functions and data structures in R for bioinformatics
Table of contents Learning Objectives R in bioinformatics Functions 🔧 The anatomy of a function 🧠 Calculating GC content in sequences 🧬 Data structures 🧱 But first… Vectors Accesing vector elements Why vectors? ❓ Let’s try our GC content function out… Code to paste into above: Matricies Back to our example… Performing the GC ...
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LIFE4138 - Advanced R part 2
Hello! Welcome to this, the final of your hard-core R workshops in LIFE4138. Last time, we looked at: control flow with for loops if/else statements creating our own functions lists So, today we are going to go back to the for loops, and talk about a slightly different way of approaching the same problem. for loops are a fundemental part of codin...
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LIFE4138 - Advanced R Part 1
Hello! Welcome to the first of the advanced R workshops on the LIFE4138 module. Our learning objectives for this session are: Learn some advanced programming skills in R, and understand that the language can be used as a “strict” programming language similar to Python etc. Think about control flow - we’ll introduce the concepts of control fl...
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LIFE4138 - R workshop 2
Welcome to the 2nd R workshop of LIFE4138! Last time, we learned a bit about the basics and structure of the R language, using base R. This time, it’s a little bit different. We’ll think about the different coding philosophies of R coding (there are many many many ways to approach R), and today I’ll guide you through a little bit of what is k...
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LIFE4138 workshop 1
Welcome to your first R workshop! 😁🥳 The aim of todays session is to give you an introduction to R, talk you through some of its uses, and how it might be useful to you as bioinformaticians. The learning objectives for todays session are as follows: To learn what R is, and how we interact with it Focus on RStudio as an interface and project...
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GLMMs
Hello! This is an RMarkdown document that I’ve created for you to help you through your mixed effects models - it allows me to embed code into a document so you can copy and paste it into your RStudio session and run it without needing me to be there to talk you through it 😀 It’s a very snazzy tool that you can use within R - so I’ve writt...
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