Publications by Evan Gu

Pairwise alignment- evg16

Global proteins aligments in R By: Avril Coghlan. Adapted, edited and expanded: Nathan Brouwer under the Creative Commons 3.0 Attribution License (CC BY 3.0). Preliminaries library(compbio4all) library(Biostrings) Download sequences As we did in the previous lesson on dotplots, we’ll look at two sequences. # Download ## sequence 1: NP_07505...

11004 sym R (8101 sym/62 pcs)

Evan Gu Portfolio- Predicting Amino Acid Chemistry

Key vocab proteinogenic amino acids regression model / line of best fit pI confidence intervals (CI) confidence ellipse correlation coefficient Selenocysteine and Pyrrolysine re-coding stop codons y = m*x + b slope intercept Key functions / packages ggpubr pander lm() coef() cor() round() Predict pI for an Selenocysteine and Pyrrolysine Amino...

5696 sym R (3234 sym/24 pcs) 1 img 4 tbl

Study Guide Part 1 Evan Gu

Setup Install any needed packages. #install.packages("lsa") #install.packages("mdendro") #install.packages("dendextend") Load all packages # packages we've used a lot library(ggplot2) library(ggpubr) # packages we've only recently started using library(scatterplot3d) library(pander) library(vegan) ## Loading required package: permute ##...

3245 sym R (24243 sym/95 pcs) 8 img 3 tbl