Publications by Charles T. Bond
Appendix_S2_Konza_ITS_data_analysis
Setup options(knitr.duplicate.label = "allow") #library(dada2) library(phyloseq) library(vegan) ## Warning: package 'vegan' was built under R version 4.1.2 ## Loading required package: permute ## Warning: package 'permute' was built under R version 4.1.2 ## Loading required package: lattice ## This is vegan 2.6-4 library(ggplot2) library(tidyr) ## ...
5154 sym R (547231 sym/1013 pcs) 41 img
Appendix_S2_Konza_ITS_data_analysis_07_2024
Setup options(knitr.duplicate.label = "allow") #library(dada2) library(phyloseq) library(vegan) ## Warning: package 'vegan' was built under R version 4.1.2 ## Loading required package: permute ## Warning: package 'permute' was built under R version 4.1.2 ## Loading required package: lattice ## This is vegan 2.6-4 library(ggplot2) library(tidyr) ## ...
5368 sym R (539032 sym/974 pcs) 43 img
Appendix_S2_Konza_ITS_analysis_March_11_2024
Setup options(knitr.duplicate.label = "allow") #library(dada2) library(phyloseq) library(vegan) ## Warning: package 'vegan' was built under R version 4.1.2 ## Loading required package: permute ## Warning: package 'permute' was built under R version 4.1.2 ## Loading required package: lattice ## This is vegan 2.6-4 library(ggplot2) library(tidyr) ## ...
5344 sym R (636058 sym/1046 pcs) 58 img
Appendix_S2_Konza_ITS_data_analysis_02-12-24
Setup options(knitr.duplicate.label = "allow") #library(dada2) library(phyloseq) library(vegan) ## Warning: package 'vegan' was built under R version 4.1.2 ## Loading required package: permute ## Warning: package 'permute' was built under R version 4.1.2 ## Loading required package: lattice ## This is vegan 2.6-4 library(ggplot2) library(tidyr) ## ...
5163 sym R (526322 sym/1133 pcs) 58 img
Appendix_S2_Konza_ITS_data_analysis
Setup options(knitr.duplicate.label = "allow") #library(dada2) library(phyloseq) library(vegan) ## Warning: package 'vegan' was built under R version 4.1.2 ## Loading required package: permute ## Warning: package 'permute' was built under R version 4.1.2 ## Loading required package: lattice ## This is vegan 2.6-4 library(ggplot2) library(tidyr) ## ...
5163 sym R (526454 sym/1133 pcs) 58 img
Konza_synoptic_ITS1_bioinformatics_pipeline_CTB_09-15-2023
Setup It loads the package before it begins or else it gets the error again library(dada2) packageVersion("dada2") ## [1] '1.26.0' library(ShortRead) packageVersion("ShortRead") ## [1] '1.56.1' library(Biostrings) packageVersion("Biostrings") ## [1] '2.66.0' library(phyloseq) library(vegan) library(ggplot2) library(tidyr) library(dplyr) library(phe...
4923 sym R (73703 sym/100 pcs) 6 img