Publications by Benjamin Solomon
Testing
R Markdown This is an R Markdown document. Markdown is a simple formatting syntax for authoring HTML, PDF, and MS Word documents. For more details on using R Markdown see http://rmarkdown.rstudio.com. When you click the Knit button a document will be generated that includes both content as well as the output of any embedded R code chunks within t...
593 sym R (268 sym/2 pcs) 1 img
Practice Downloading a Fasta File
This is a modification of “DNA Sequence Statistics” from Avril Coghlan’s A little book of R for bioinformatics.. Most of the text and code was originally written by Dr. Coghlan and distributed under the Creative Commons 3.0 license. NOTE: There is some redundancy in this current draft that needs to be eliminated. Functions library() help...
12917 sym R (1943 sym/40 pcs)
hShroom 3 Dot Plot Investigation
Add the necessary code to make this script function. Preliminaries Load packages library(seqinr) library(rentrez) library(compbio4all) library(Biostrings) ## Loading required package: BiocGenerics ## Loading required package: parallel ## ## Attaching package: 'BiocGenerics' ## The following objects are masked from 'package:parallel': ## ...
1214 sym R (6361 sym/40 pcs) 5 img
Class wide Gene Study
The goal of this exercise is to make you familiar with how to download data from Google Sheets and to briefly review some key concepts R functions and coding concepts. We’ll do the following things Download data from our class’s collective Google sheets Ensure that the downloaded data has been downloaded correctly Remove any rows with hazardo...
4910 sym R (18226 sym/124 pcs) 1 img
Global Protein Alignment for OCA2 Human and Mosquitoes
Global proteins aligments in R By: Avril Coghlan. Adapted, edited and expanded: Nathan Brouwer under the Creative Commons 3.0 Attribution License (CC BY 3.0). Preliminaries library(compbio4all) library(Biostrings) Download sequences As we did in the previous lesson on dotplots, we’ll look at two sequences. # Download ## sequence 1: Human OC...
11265 sym R (12923 sym/88 pcs)