Publications by Beni Stocker
Document
## ## Attaching package: 'dplyr' ## The following objects are masked from 'package:stats': ## ## filter, lag ## The following objects are masked from 'package:base': ## ## intersect, setdiff, setequal, union ## [1] "processing site ARG_MAZ (1 of 194)" ## [1] "processing site ARG_TRE (2 of 194)" ## [1] "processing site AUS_BRI_BRI (3 of 1...
8 sym Python (9899 sym/4 pcs) 1 tbl
Document
library(dplyr) ## ## Attaching package: 'dplyr' ## The following objects are masked from 'package:stats': ## ## filter, lag ## The following objects are masked from 'package:base': ## ## intersect, setdiff, setequal, union library(fuzzyjoin) library(FluxDataKit) # install.packages('sapfluxnetr') library(sapfluxnetr) # get sapfluxnet dat...
15 sym R (11801 sym/11 pcs) 1 tbl
Document
# some general libraries library(dplyr) library(tidyr) library(ggplot2) library(here) library(visdat) library(lubridate) Aim Simulations with the P-model, implemented in {rsofun}, rely on forcing data in the form of time series of all input variables, provided at the time scale of the model time step (daily). The model output is at the same time ...
3557 sym R (2334 sym/13 pcs) 3 img
Document
Load example data: FluxDataKit. library(dplyr) library(ggplot2) library(sf) library(rnaturalearth) library(FluxDataKit) Show sites on a map coast <- rnaturalearth::ne_coastline( scale = 110, returnclass = "sf" ) FluxDataKit::fdk_site_info |> ggplot() + geom_hex( aes(x = lon, y = lat), bins = c(75, 60) ) + geom_sf( data = ...
58 sym R (463 sym/2 pcs) 1 img
Publish Document
Data library(dplyr) library(tidyr) library(ggplot2) library(rsofun) library(here) library(lubridate) library(FluxDataKit) Read nice file from FluxDataKit. This contains meteorological data, remotely sensed LAI and fAPAR, and observations-based GPP from an extended set of FLUXNET sites. path_forcingfile <- "~/data/FluxDataKit/v3/rsofun_driver_data_v...
1623 sym R (8059 sym/23 pcs) 6 img
Document
Data library(dplyr) library(tidyr) library(ggplot2) library(rsofun) library(here) library(lubridate) Read nice file from FluxDataKit. This contains meteorological data, remotely sensed LAI and fAPAR, and observations-based GPP from an extended set of FLUXNET sites. path_forcingfile <- "~/data/FluxDataKit/rsofun_driver_data_clean.rds" driver <- read...
1237 sym R (5498 sym/15 pcs) 5 img
Document
Read data This loads data from FluxDataKit. df <- read_rds("~/data/FluxDataKit/rsofun_driver_data_clean.rds") df_fr_pue <- df |> filter(sitename == "FR-Pue") |> select(forcing) |> unnest(forcing) Plot GPP in years 2013 and 2014 is ominously low. ggplot(data = df_fr_pue) + geom_line( aes( date, gpp ), colour = "b...
387 sym 2 img
Publish Document
Code for this notebook is here. Model setup The P-hydro model (Joshi et al., 2022) is used here to illustrate the effect of acclimating P50 (leaf water potential at 50% loss of conductivity) and K (whole plant conductivity) on the response of stomatal conductance and transpiration to VPD and soil moisture. # other environmental factors held consta...
738 sym 1 img
Publish Document
Model setup The P-hydro model (Joshi et al., 2022) is used here to illustrate the effect of acclimating P50 (leaf water potential at 50% loss of conductivity) and K (whole plant conductivity) on the response of stomatal conductance and transpiration to VPD and soil moisture. # other environmental factors held constant kphio = 0.087; # quantum...
649 sym 2 img
Document
Model setup The P-hydro model (Joshi et al., 2022) is used here to illustrate the effect of acclimating P50 (leaf water potential at 50% loss of conductivity) and K (whole plant conductivity) on the response of stomatal conductance and transpiration to VPD and soil moisture. # other environmental factors held constant kphio = 0.087; # quantum...
646 sym 1 img