Publications by » R
Bio7 R Documentation and Plot Examples
18.07.2014 A very time expensive process is the documentation of software you created yourself. I was finally able to update and improve the documentation for Bio7 and the embedded R “Graphical User Interface”. For the documentation this time i used Lyx to export the LaTeX document as HTML with the available eLyXer export module. The R Graphi...
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Simple R Debugging GUI for Bio7
26.09.2014 For the next release of Bio7 I implemented a first simple debugging GUI (Graphical User Interface) for R scripts. For the debugging process a change from Rserve to an available Java R console connection in Bio7 is necessary (with Rserve alone a debugging interface wouldn’t be possible). Both connections runs in the same process and a...
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R Debugging GUI Improvements for Bio7
20.11.2014 In my last post i presented the first version of a debugging GUI for R in Bio7 which is just a visual wrapper for the default R debugging functions. In the meantime i added some new methods and also improved the visualization. For the upcoming Bio7 release i have to make some cleanups but however here is a short video showing some basi...
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Bio7 2.0 for Windows Released!
01.12.2014 A new Windows version of Bio7 is available. Many new features have been added to Bio7 2.0 which is now based on Eclipse 4.4. Highlights are the improved R editor, the R debugging Graphical User Interface (using the standard R debugger), the integrated Java Development Tools (JDT) to create Java simulation models with a powerful Java ed...
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Image Data Transfer to R with ImageJ and Bio7 2.0
09.12.2014 In the new version of Bio7 2.0 i added some new easy to use functions to transfer image data from ImageJ to R. For example, you can now drag a folder of images on the ImageJ-Canvas view, open them memory efficient as a virtual stack in ImageJ and transfer them with one action as a list (or raster stack) to R. With the new or improved ...
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Bio7 2.0 for Linux Released!
01.02.2015 I released the Linux version of Bio7 2.0 (see screenshot below). For an overview of the new Bio7 features follow the link: Bio7 2.0 new features Added Linux features: A new Java menu action (in the Scripts menu) is available to start a Py4J server which can communicate to Java and CPython (if enabled in the native preferences of Bio7...
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Bio7 Overview Video
06.03.2015 For the upcoming EclipseCon 2015 where I present the Bio7 application I created an overview video (see below) which summarizes some of the main Bio7 functionality. This time the Eclipse Con is co-located with the FOSS4G. So many interesting things will be presented at one place. If you find the time don’t miss this event. Related ...
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Bio7 2.0 for Windows 32 bit Release
24.03.2015 Because of some requests of a Windows 32 bit version of Bio7 2.0 I uploaded a built to sourceforge. Release notes: Updated R to version 3.1.3 Updated ImageJ to version 1.49p Added some ImageJ dialog options (to stay on top, e.g., the ROI Manager) Updated Java to version 1.8.40 Updated the JavaFX embedded SceneBuilder to Java 1.8.40 I...
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Knitr with Bio7
16.04.2015 In Bio7 it is possible to write a documentation in knitr. A simple visual and textual HTML editor (based on JavaFX) and an embedded Latex editor (based on TeXclipse) helps in the creation of a *.html or *.pdf documentation. For the *.pdf creation a TeX environment has to be available (Windows e.g. MiKTeX). Overview video: Note that th...
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Bio7 2.1 for Windows 64 bit released
18.05.2015 I released a new version of the Integrated Development Environment Bio7 with new functions and many visual layout improvements of the Bio7 Graphical User Interface. Bio7 2.1 can be downloaded here: http://bio7.org Release notes Bio7 2.1: R: Updated R to version 3.2.0. Improved the R perspective layout (see below). Improved the syntax...
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