Publications by Brandon Whitcher
oro.nifti 0.1.5
The latest version of oro.nifti (0.1.5) has been released on CRAN. New features include:Reduced overall size of the package by 50%Minor improvements; for example, the XML package is no longer required as indicated from the DESCRIPTION file Please use the mailing list for any suggestions and/or concerns. Related To leave a comme...
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Call for Papers: Special Issue in JSS for "Magnetic Resonance Imaging in R"
We hereby call for the submission of original papers for a Special Issue of the Journal of Statistical Software (JSS – http://www.jstatsoft.org)Magnetic Resonance Imaging in R planned for Summer 2011. The deadline for submission is October 31, 2010.All MRI modalities are welcome, for example, structural MRI, functional MRI, diff...
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oro.nifti 0.2.0
The latest version of oro.nifti (0.2.0) has been released on CRAN. New features include:Reduced overall size of the package by an additional 50% This is a 75% reduction in total from version 0.1.4Four-dimensional acquisitions are now re-oriented and re-sliced appropriately when converting from DICOM to NIfTI Please use the maili...
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oro.dicom 0.2.7
The R package oro.dicom contains functions for the input/output of medical imaging data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard. This package is part of the Rigorous Analytics bundle. The latest version of oro.dicom (0.2.7) has been released on CRAN. New features include:Improved handling of table...
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oro.nifti 0.2.1
The R package oro.nifti contains functions for the input/output and visualization of medical imaging data that follow either the ANALYZE or NIfTI formats. This package is part of the Rigorous Analytics bundle.The latest version of oro.nifti (0.2.1) has been released on CRAN. New features include:More efficient use of validity checkingAdded ...
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dcemriS4 0.34
The R package dcemriS4 is a collection of functions, with examples and documentation, that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) or diffusion-weighted imaging (DWI) data. The primary application of this methodology is oncology, but applications to other therapeutic areas (such as neuro...
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DEADLINE EXTENDED — CFP: Special Issue in JSS for "Magnetic Resonance Imaging in R"
Magnetic Resonance Imaging in R The deadline for submission to the Special Issue of the Journal of Statistical Software(JSS – http://www.jstatsoft.org) has been extended to November 14, 2010.All MRI modalities are welcome, for example, structural MRI, functional MRI, diffusion tensor or diffusion-weighted imaging, perfusion MRI, pharmacologica...
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dcemriS4 0.40
The R package dcemriS4 is a collection of functions, with examples and documentation, that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI) or diffusion-weighted imaging (DWI) data. The primary application of this methodology is oncology, but applications to other therapeutic are...
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oro.nifti 0.2.4
The R package oro.nifti contains functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.Orthographic display of structural MRI acquisition from the AFNI data collection (afni_anat1+orig.BRIK). The latest version of...
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Data-driven arterial input functions
I haven’t devoted any time/effort/code to the extraction and parameter estimation of arterial input functions (AIFs) for DCE-MRI in either the vignette or the submission to JSS. Frankly, I wanted to communicate the main features of the R package dcemriS4 and data-driven AIFs just haven’t made the list… up ’til now. So let�...
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